I'm noticing this same issue on my 2017 Jeep Wrangler running DUDU7 3.5. Remote start does not power up headunit. Once I get in and turn the key after remote start, headunit powers on, but sometimes (not every time) there's no sound. I also do not hear the typical amp/sub pop. I can fix the issue by turning the vehicle off and restarting.
This was not an problem with the stock headunit. I'm wondering if the problem is related to the factory upgraded Alpine audio with amp and sub in my vehicle.